Optical Mineralogy


(Week 9: November 2, 4, 6)

The Petrographic (Polarizing) Microscope


The petrographic or polarizing microscope is a very useful device for determining the optical properties (differences) between various minerals which makes it a useful device for classifying different rock types. Its primary function is to yield an enlarged image of a mineral thereby revealing identifiable features that are otherwise not apparent in hand sample. The optical properties of different minerals are further revealed with the aid of plane and crossed polarized light (explained below). Magnification of a mineral is achieved by a combination of two sets of lenses; the objective and ocular. The objective provides a sharp clear image of the mineral while the ocular further enlarges and improves the clarity of the mineral image provided by the objective. Most petrographic microscopes include three objectives that differ in light gathering power between low (a magnification of 2 times), medium (10 times) and high (50 times). Although each polarizing microscope has only one ocular (or one pair of oculars) they also come in a range different magnifications (5, 7 and 10 times). The total magnification of the mineral image can be determined my multiplying the objective magnification by the ocular magnification. Oculars usually have cross hairs (one oriented north-south, the other oriented east-west) which provide a reference to orient individual mineral grains under different magnifications. A light condenser is located below the microscope stage and can be adjusted to make light converge which is particularly useful to illuminate minerals under high magnification for observation of mineral interference figures (explained below). A diaphragm, also located below the microscope stage, can be adjusted to control the intensity of light entering the mineral. The polarizing microscope utilizes two polars, a low polar and upper polar. The lower polar or Nicol prism (usually found on older microscopes) is located in the sub-stage condenser and it transmits light in the N-S plane of the microscope (see below for an explanation of polarization). The upper polar or analyzer is fitted above the stage in the upper microscope tube. It is also a prism oriented so that it only transmits light in the E-W plane of the microscope. The lower polar (Nicol prism) remains in position always, while the analyzer (upper polar) can be removed from the optical path. When both polars are in place, the polars (the lower and the upper) are said to be crossed. The Bertrand Lens is used to observe mineral interference figures (explained below). An accessory plate can be inserted into the microscope to determine the optic signs of a minerals (explained below).

Rock Thin Sections

Aggregates of minerals are commonly studied in thin section, slices of rock material 0.03 mm thick (with lateral dimensions between 10 to 20 mm wide and 20 to 30 mm long). These thin slices of rock are usually mounted on a glass slide and cemented to the slide with a mounting compound of known refractive index. The most common mounting compound used is Canada balsam with a refractive index of 1.54 (explained below). Mineral grains within thin sections have been ground to a thickness of 0.03 mm, a thickness at which most minerals allow light to be transmitted through them. This standardization of thicknesses of different mineral grains in a thin section slide allows the accurate comparison of optical characteristics of different minerals. This is useful in the identification of different minerals leading to characterization of mineral aggregates as different rock types.

Basic Properties of Minerals Under Plane Polarized Light

Transparency

The majority of minerals are transparent to light in thin section with the exception of metallic minerals which are opaque.

Colour

Most transparent minerals are colourless in thin section. Some minerals (calcite, augite) show colour changes as they are rotated on the plane of the microscope stage in plane polarized light (Pleochroism).

Shape and Cleavage

The form of crystals and the arrangement of cleavage planes within them are useful for identification.

Inclusions

Some minerals often contain smaller inclusions of other minerals.

All other microscope related properties used to identify minerals in thin section relate to the refraction of light transmitted through crystals.

Light Behaviour

Visible light is part of the electromagnetic spectrum. Light emitted by an object travels in a straight line from and vibrates perpendicular to the direction of its propagation (in all directions) in a transverse wave motion. Light, traveling as a wave, has a wavelength (L) defined by the distance between successive wave crests (or troughs) and a travel velocity (c, the speed of light). The number of waves passing a fixed point per second (a function of its velocity) defines the frequency of light (f = c/L).

Visible light is composed of all wavelengths between 0.0004 (violet) and 0.0007 cm (red), a very narrow range within the total electromagnetic spectrum (wavelengths between 0.0000000001 and 1000 cm). These different wavelengths of light produce the different colours as visually perceived by our eyes. Colour is the result of sensations produced by different wavelengths of light on pigments in the retina of our eyes. The three main pigments in the cones of our eye’s retina respond individually to the different wavelengths of the visual spectrum of light. Absorption in those three pigments are the fundamental mechanism of colour sensation in that the total sensation of colour is associated with the absorption characteristics of these pigments acting together.

Light Refraction in Minerals

When light encounters a mineral some of it is reflected from the surface of the mineral and some of the light enters the mineral (crystal lattice). Light entering the crystal from a less dense medium, like air, experiences a change in its original path or intersection (the incident light ray path), due to the ordered arrangements of atoms within the crystal structure, and is consequently bent or refracted. The degree of refraction (bending) of the incident light ray depends on the velocity of the light ray and the angle of the incident ray. Generally the greater the difference of velocity of the light ray in air versus the crystal, the greater the refraction (bending) of the light ray through the mineral from its original path. As mentioned above, the behaviour of light entering a crystal is fundamentally controlled by the crystal structure. The internal symmetry of a crystal is dependent upon the orientation of atoms. The arrangement of the atoms determines how light interacts with the crystal which will determine the amount of refraction that light experiences while transmitting through the crystal or the refractive index (RI) of the crystal. Therefore, minerals can be identified by their refractive index or indices (if doubly refracting).

The refractive index (n) of a substance is defined as:

n = v / V

Where v is the velocity of light in a vacuum (or air), and V is the velocity of light in the substance. It is assumed that the refractive index of light in air is essentially the same as a vacuum, = 1 (water has a refractive index of 1.33, Petrologic slide mounting compound, Canada balsam, has a refractive index of 1.54).

The refractive index of the light itself entering a crystal increases as the its wavelength decreases. Therefore, two things determine the refractive index. Difference in velocity between light in air and light in the mineral. Also, velocity differs for different wavelengths of light (RI greater for violet end of light than for red end). This is called dispersion. All minerals have provide some light dispersion.

Light slows down when it enters a mineral, so the refractive index will always be greater than 1. Most minerals have refractive indices with values between 1.50 and 1.80.

Isotropic crystals (those belonging to the cubic crystal system) have only one refractive index (see the explanation below). Under plane polarized light crystals that have an RI that is different than the thin section mounting compound (Canada balsam) will be seen to have relief. The greater the difference between the RI of the mineral and the mounting compound, the more apparent the relief. A Becke Line test can be used to determine whether the mineral RI is greater than the Canada balsam RI.

Becke Line

A Becke line is a band or rim of light visible along a grain/crystal boundary in plane-polarized light. It is best seen using the intermediate power lens (or low power in some cases), on the edge of the grain.

Becke Line Test

When a mineral grain is taken out of focus by lowering the stage of the microscope, a narrow line of light will form at the edge of the mineral grain and move toward the medium of higher refractive index. If the Becke Line moves into the mineral grain, then the mineral has a higher RI than the liquid. The single index of refraction is significant for isotropic minerals.

A Becke line is the result of minerals in thin sections tending to be thicker in their centre and thinner towards their edges. This makes them act as lenses such that if its refractive index is higher than the mounting medium the rays converge toward the center of the grain; if the refractive index is lower, the rays diverge towards the edge of the grain.

Determination of a mineral’s RI can be made by mounting the slide in liquids (oils) with different RI values and determining (using the Becke line test) which liquid (with calibrated RI) the mineral’s RI is most closely matched. Very accurate refractive index determinations of minerals are done with monochromatic light and a device called a refractometer.


Week 10 (November 9, 11, 13)

The difference between the refractive indices of the ordinary (slow) and the extraordinary (fast) rays (N-n) is called birefringence (doubly refracting). This gives rise to interference colors in thin sections when viewed under Cross Polarized light, a characteristic useful for telling minerals apart.

Carbonates are among the few minerals that have a large enough ordinary to extraordinary RI difference (N-n) to show an effect in regular and plane polarized light. Calcite spar shows a double refractive image when viewed through a crystal face parallel to the basal plane. The large RI difference makes calcite in thin sections appear to "twinkle" as the stage is rotated under Plane Polarized Light. Most other anisotropic minerals only reveal their subtle N-n differences under crossed polarized light as interference colours.

Mineral Extinction Angles

Isotropic minerals remain dark (extinct) in all positions under crossed polarized light, which makes them easy to distinguish from anisotropic minerals in thin section. Under certain conditions some uniaxial anisotropic minerals show light extinction (remain dark in some positions) under crossed polarized light.

The angle between a light ray (ordinary or extraordinary) vibrational direction and any specified crystallographic direction (cleavage or crystal face identified in thin section) is called the extinction angle. The extinction angle of a mineral is found by first rotating the mineral into an extinction position then rotating the mineral (by rotating the stage) until the identifiable crystallographic feature (cleavage or crystal face) is parallel to the polarizer and analyzer vibrational directions (as indicated by the ocular cross hairs). The angle of extinction is the angle between the position of mineral extinction and the polarizer (or analyzer). If the angle between the crystallographic feature and the polarizer (or analyzer) vibrational directions is zero, the mineral is said to have straight extinction. If the angle is not zero, the mineral is said to have inclined extinction.

The extinction angle can be an important distinguishing character for different minerals. However, it is important to note that grains of the same mineral, in different orientations, will show different kinds of extinction. If inclined extinction is shown for most of the mineral's grains it is useful to note the maximum extinction angle shown.

In general, minerals belonging to the tetragonal, hexagonal, trigonal or orthorhombic crystal systems will show straight extinction. Minerals belonging to the monoclinic and triclinic systems usually show inclined extinction.

Twinning

Polymorphic minerals, as the name suggests, are minerals that can form more than one type of structure. Polymorphism is, usually, a response to changes in temperature and pressure during crystallization. Displacive polymorphism is a function of temperature. After the mineral crystallizes at a certain temperature, further stabilization of the mineral structure (at a lower temperature) may require the rearrangement of atoms. Achieving a more stable crystal structure may be as simple as a readjustment of bond angles between atoms (rather than the breaking of bonds which requires more energy). The bond angle "kinking" that results in a reduction of crystal symmetry can produce two structural atomic arrangements separated by a twin plane (twinning).

Twinning is a prominent feature of plagioclase feldpars which often show a stripey pattern in thin section. The crystal in thin section is observed to have black and white narrow lamellae which alternate in orientation. These are caused by lamellae of one orientation (the black lamellae) being in an extinction position, while the other (the white lamellae) is not.

More about Uniaxial and Biaxial Anisotropic Minerals


Anisotropic minerals are subdivided into two groups: uniaxial and biaxial.

Hexagonal and tetragonal crystal system minerals are characterized by two or three equal (in length) crystal axes (a-axis) in the plane perpendicular to the optic axis (c-axis) of a different length (greater or less than the a-axis). The refractive indices of the ordinary and extraordinary refracted rays of minerals in these crystal systems are characterized by the two different crystal axis lengths. In these cases, where light is split into an ordinary and extraordinary rays along two crystal axes, there is one optical axis along which all light rays travel with the same velocity (zero birefringence) and, therefore, these anisotropic minerals are referred to as uniaxial.

Orthorhombic, monoclinic and triclinic crystal system minerals have three crystal axes (a, b, c) of unequal length. The RI values of the light rays refracted through minerals in these crystal systems are characterized by the three different crystal axis lengths. Note, in these cases light is split along two of the three possible crystal axes at a time depending on the orientation of the mineral's crystal axes in thin section. There are two planes in these anisotropic minerals perpendicular to which refracted light rays travel at the same velocity (have the same RI) and, therefore, show zero birefringence (they appear dark under crossed polarized light when rotated). These anisotropic minerals that have two optic axes are referred to as biaxial.

Interference Figures


Mineral interference figures are produced by converging light (conoscopic light) under crossed polars. Interference figures are resolved by the Bertrand Lens which is a converging lens that allows the observation of interference figures projected to the back focal plane of the objective and, subsequently, not resolved by the high power objective.

The convergence of polarized light with the same wavelengths causes destructive interference where the light is extinguished parallel to the microscope polarizers. Under crossed polarized light a black cross (isogyre) figure is produced.

Uniaxial minerals oriented with their optic axes perpendicular to the plane of the thin section show centered isogyres. In other cases where the minerals being viewed are oriented such that their optic axes are at an angle to the plane of the thin section, the isogyres appear uncentered.

Biaxial minerals (with two optic axes) viewed under conoscopic light also produce isogyre interference figures. However, biaxial mineral isogyres separate into two hyperbolic isogyres as the stage of the microscope is rotated. The angle between the two optic axes of a biaxial anisotropic mineral is the optic angle (2V). A biaxial mineral has an acute bisectrix (a plane that bisects the acute optic angle) and an obtuse bisectrix (a plane that bisects the obtuse optic angle).

Mineral Optical Signs


If the ordinary ray of a
uniaxial mineral is determined to have a greater velocity than the extraordinary ray, the mineral is said to be uniaxial positive, and uniaxial negative if the extraordinary ray is determined to have the greater velocity.


Gypsum and quartz accessory plates (lenses) may be used in conjunction with a uniaxial isogyre to determine the optic sign of a uniaxial mineral. These accessory plates have a specific orientation of their ordinary (slow) and extraordinary (fast) rays and, therefore, they either add to (retard) or deplete (compensate) the amount of interference produced by the mineral (evident as a colour shift).

The gypsum plate is useful in determining the optical sign of uniaxial minerals that show very low (dull grey) interference colours in their isogyre quadrants. The gypsum plate is essentially a red filter (the black isogyre appears red). If the slow direction of the plate (usually marked on the plate) in position is parallel to the slow direction of the mineral then the order of the interference colour increases (the plate further retards or interferes with the mineral fast ray). The colour in the isogyre quadrants in line with the gypsum plate slow ray direction is blue shifted (according to the Interference colour chart), and the mineral is identified as uniaxial positive where the velocity of the ordinary ray is greater than that of the extraordinary ray. Alternatively, if the slow direction of the plate in position is parallel to the fast direction of the mineral then the interference colour is compensated (the plate reduces interference with the mineral slow ray). The colour in the isogyre quadrants in line with the gypsum plate slow ray direction is yellow shifted (according to the Interference Colour Chart), and the mineral is identified as uniaxial negative where the velocity of the extraordinary ray is greater than that of the ordinary ray.

The quartz plate is useful in determining the optical sign of uniaxial minerals that show high interference colours in their isogyre quadrants. The quartz plate is actually a wedge that varies in thickness along its length. The thickness variation produces a variation in colour (colour bands) in the isogyre quadrants that are ordered according to the Interference Colour Chart. Inserting the quartz wedge into the microscope thin edge first (where its thickness increases as the wedge is further inserted) has the effect of increasing the interference of the ordinary and extraordinary rays produced by the mineral, similar to the effect you would get when the thickness of the mineral is increased. When a quartz wedge is slowly inserted in the path of the optic axis of a uniaxial negative mineral (extraordinary ray faster than the ordinary ray) the colour bands in the northwest and southeast isogyre quadrants move towards the center of the isogyre (and disappear) while the colour bands in the northeast and southwest isogyre quadrants move towards the edge of the isogyre field. This reinforcement (center movement) of the interference colours in the NW and SE quadrants of the uniaxial negative mineral, in conjunction with the increasing retardation associated with the gradual insertion of the quartz wedge, corresponds to the situation where the slow direction of the plate (usually marked perpendicular on the wedge) is parallel to the fast direction of the mineral. The opposite effect occurs for uniaxial positive minerals.

Most uniaxial minerals have a negative optical sign.

Biaxial Optical Signs

The optic sign of a biaxial mineral is easiest to determine with the aid of accessory plates when both (the acute bisectrix interference figure) or only one of the optic axis figures (isogyres) are observed for the mineral.

By definition, the velocity of all light rays moving along an optic axis have a constant velocity. For a negative biaxial mineral the velocity of light rays in the acute bisectrix plane are slower than the velocity of light rays traveling in the obtuse bisectrix plane of the mineral. When a gypsum plate (with slow ray oriented parallel to the obtuse optic plane) is inserted into the path of the light emerging from a negative biaxial mineral the slow direction of the plate in position is perpendicular to the slow direction of the mineral (traveling in the acute bisectrix plane). In this case the gypsum plate reduces the interference (subtraction) on the slow moving light rays and a yellow colour is produced on the convex side of the isogyre. Insertion of a gypsum accessory plate in the light path of a biaxial positive mineral results in the production of a blue colour on the convex side of the interference isogyres.

The quartz wedge may also be used to determine the optic sign of biaxial minerals, particularly for highly birefringent minerals. For a biaxial negative mineral, insertion of a quartz wedge results in the outward movement (away from the center) of colour bands on the convex side of the isogyres (interference subtraction) and inward movement (toward the center) of colour bands on the concave side of the isogyres (additional interference). The opposite behaviour is seen for positive biaxial minerals.


Optical Mineralogy References

Klein, C. and Hurlbut, C.S. Manual of Mineralogy (21st Ed.). John Wiley & Sons, New York. (1993). 681 pp.

Shelley, D. Manual of Optical Mineralogy. Elservier, Amsterdam (1981). 239 pp.

Stoiber, R.E. and Morse, S.A. Microscopic Identification of Crystals. Krieger, New York. (1981). 278 pp.